PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2128 (510 amino acids)

SeqID: GFF2128 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2128
MKDILSELEDRRNAARLGGGQKRIDAQHGRGKLTARERIELLLDEGSFEEFDMFVAHRCT
DFGMENQRPAGDGVVTGWGTINGRMVYVFSQDFTVFGGSLSETHAQKICKIMDMAVQNGA
PVIGINDSGGARIQEGVASLAGYAEVFQRNIMASGVVPQISVIMGPCAGGAVYSPAMTDF
IFMVKDTSYMFVTGPDVVKTVTNEVVTAEELGGASTHTKKSSVADGAFENDVEALAEVRR
LVDFLPLNNREKPPVRPFFDEPGRVETSLDTLIPANPNTPYDMKELIHKVADEGDFYEIQ
EDFAKNIITGFIRLEGQTVGVVANQPTVLAGCLDIDSSRKAARFVRFCDCFEIPILTLVD
VPGFLPGTSQEYGGVIKHGAKLLFAYGEATVPKVTVITRKAYGGAYDVMASKHLRGDFNY
AWPTAEIAVMGAKGATEIIHRADLADADKIAEHTKDYEERFANPFVAAERGFIDEVIMPQ
STRKRVSRAFASLRGKQLKNPWKKHDNIPL