PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2134 (551 amino acids)

SeqID: GFF2134 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404339: Choline dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2134
MNADYVIVGAGSAGCAMAYRLSEAGKSVLVIEHGGTDAGPFIQMPGALSYPMNMSMYDWG
YKSQPEPHLGGRELVCPRGKVVGGSSSINGMVYVRGHAGDYNHWAESGAAGWSYADVLPY
FKRMETWDDRGHGGDPDWRGTDGPLHVTRGPRDNPLHAAFVKAGEQAGYPVSKDYNGEQQ
EGFGPMEMTVYKGQRWSAANAYLKPALKRDNCEMIRALARKVVIEDGRAVGVEVERGGKI
EVIRANAEVILAASSLNSPKLLMLSGIGPAKHLAEHGIDVVVDRPGVGQNLQDHLEFYFQ
FASKQPITLFKYWNLFGKALVGAQWLFTKTGLGASNQFESAAFIRSDKGVDYPDIQYHFL
PIAVRYDGQAAAEGHGFQAHVGPMRSDSRGEVTLASADPNDAPKILFNYMSTEKDWEDFR
KCIRLTREVFAQDAMKPFVKHEIQPGDALQSDEELNGFIREHVESAYHPCGTCKMGAVED
PMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMTGEKASDHILGRRLPSSNAEP
WFNPNWEGSQR