PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2136 (566 amino acids)

SeqID: GFF2136 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2136
MTQPFLAARDFLLAHRTDYATAVRDFRWPQLGEFNWALDYFDAMAEGNPADALWIVEEDG
SEQRYSFQQLAARSNQVANHLRALGVNRGDRVLLMLGNDVALWDTMLAAFKLGAVVIPAT
ALLNPDDLRDRIERGQVRHVVVGEAHVHKFAGLAQGCSRICVGSAPAGWVAHNAAFEYPE
QFEAQGRTLATDPMLLYFTSGTTSKPKMVLHSHQSYPVGHLSTMYWIGLQPGDLHLNISS
PGWAKHAWSCLFAPWNAGACIFIHNVARFSAPALLSALERYGVTSLCAPPTVWRMLIQED
LASYRPRLSLRELVGAGEPLNPEIIEQIQQAWGLPLRDGFGQSETTALVGNTPGQLLKPG
SMGRPLPGYQVALLDPDGIPGNEGEVALPLDVRPLGLMLCYEDSPEKTAEVMRDGYYRTG
DTAQIDADGYITFVGRADDVFKASDYRISPFELESALIEHPAVMEVAVVPSPDPLRLAVP
KAFLILAHDEPGSAALAQHILAFAREHLAPYKRVRRIEFVTELPKTISGKIRRVELRQME
VLRRQGDTRGEHEHFEEDFVRPTAES