PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2149 (802 amino acids)

SeqID: GFF2149 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Cytoplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2149
MKRASRAAGVSRLLLLGLGVIIALLGLALAIGGVKLVSLGGSWYFLIGGAIMAIAGLLIA
CRKPAGAWVFAAFLIGTAIWAVADVGLVFWPLFSRLFMFAAIGMVVALVYPLLVNKPARG
AYAVAAVLAAGVAVAAGNMFVAHPSVAPTGAGPGITPVAAGDAQKDWAHYGNTEGGSRFA
ALDQINRDTVNKLKVAWTYHTGDVAISDGNGAEDQLTPLQIGNKVFICTPHNNLIALDAD
TGKELWKNEVNAKSAVWQRCRGMAYFDATAPIAQPTQPNSSPIMPASVPAGAQCQRRLLT
NTIDARLIAVDADTGKFCEDFGTHGQVDLKAGLGNVPDSYYQLSSAPLIAGTTVVVGGRV
ADNVQTDMPGGVIRGFDVISGQMRWAFDPGNPEDKQAPADGSTYVRSTPNSWAPMSYDPL
MNTVFLPMGSSSTDIYGVERTQLNHKYGASVLALDASTGAEKWVYQTVHNDLWDFDLPMQ
PSLIDFTPPGSDKAVPAVVIGTKAGQIYVLDRATGKPLTDVQEVPVKAANIPNEPYSPTQ
PKSVGMPQIGAQTLTESDMWGATPFDQLLCRIDFKGMRYEGLYTAPGTDKSLSFPGSLGG
MNWGSISTDPVHGFIFVNDMRLGLWIQMVPSQNKAQASSGGEALNTGMGAVPLKGTPYAV
NKNRFLSVAGIPCQAPPFGTLTAIDMKTQKVAWQVPVGTVEDTGPLGIRMHLPIKIGLPT
LGGTLSTQGGLIFIAGTQDFYLRAFNSGNGDEVWKARLPVGSQGGPMTYVSPKTGKQYIV
ITAGGARQSTDRGDYVIAYALP