PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2177 (585 amino acids)

SeqID: GFF2177 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2177
MRTAIIEKQPKDLTVPPNWPDARFSEGEFSWPMAADALNGLPGGGLNLAHEAVDRHAAGP
RAGYCALRFLERNGSRRELSYLQLKRQTNRFANVLAQLGVARGERLFVLCNRGVELYLGV
LGGLKNGCVVSPLFAAFGPEPLETRLRLGDCSVLLTSEMLYRKKVARLRDRLPLLKHVLL
YDESGGHTSIDGTLDLHDLLAAAGEEFKIAPTTADSPSLLHFTSGTTGTPKGALHVHGAA
LTHYVTGRYALDLHPDDIYWCSADPGWVTGTSYGILAPLLLGVTSVVDCGEFDAERWYGI
LEKERISVWYTAPTAIRMLMKAGPELARRHFHPQLRFVASVGEPLNPEAVWWGKEVLGLP
IHDNWWQTETGGIMIANIPAMPIKPGSMGKPLPGVEAAIVRHGEDGNLTFLGDDEIGELA
LKQPWPGMFRTYLGQEERYRRCFAGDWYLSGDLARRDADGYYWFIGRSDDVIKSAGHLIG
PFEVESALMEHSAVAEAAVIGKPDPLLGETVKAFVSLKRGREASEALHDELIGHARKRLG
AAVAPKELEFLASLPRTRSGKLMRRLLKARELGLPEGDISTLENP