PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2255 (481 amino acids)

SeqID: GFF2255 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6225798: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2255
MIAIGVFAMRRATSSSEDYMLGGRALSPKVAALSAGASDMSGWLLLGLPRALFASGLGSA
WIGIGLLVGAFFNWTLVAPRLREQTVHYGNAITIPSFLANRFPTQALSLRTVSAIVIVIF
FAVYTASGLVAGGKLFESAFSGIFNFGGLSDYAVGIVITLGVVLAYTVVGGFLAVSLTDF
VQGCIMMLALVIMPAVVLFGEGGGGFAQASQTLNEVDPTLLSWTEGLTFIGWLSAVTWGL
GYFGQPHIIVRFMAIRTLKDVPVARNIGMSWMLISLIGAISLGVFGRAYAIRNGMDVQDP
ETIFIILSDMLFHPLITGFLYAALLAAVMSTISSQLLVSSSSLTEDFYRLFLRKEASDKE
CVNIGRVCVVLVGLVAAVIASDPNSQVLALVANAWAGFGAAFGPLIILSLMWPRTNGAGA
IAGMVVGAATVMIWISLGWNGSFMGGPGVYEIIPGFIAAFIAILVVSSATADAGEYQHIE
R

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory