PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2264 (875 amino acids)

SeqID: GFF2264 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2264
MMRVKTVLEAYRKHVEERAAQGVVPQPLNAEQTAGLVELLKNPPAGEEEFLVDLITNRVP
AGVDEAAYVKAGFLSALAKGETSSPLLSKQRAVELLGTMQGGYNISTLVELLDSAELGAV
AAEQLKHTLLMFDAFHDVAEKAKAGNEHAKAVMQSWAEGEWFTNRPAVAEKVSLSVFKVT
GETNTDDLSPAPDAWSRPDIPLHALAMLKMARDGINPDVPGSVGPIKQMEELKAKGFPVA
YVGDVVGTGSSRKSATNSVLWFFGDDIPNVPNKRAGGFCFGTKIAPIFYNTMEDAGALPI
EFDCSNLAMGDVIDVYPYAGKVCKHGTDEVITTFELKTDVLLDEVRAGGRIPLIIGRGLT
EKARAEMGLAPSTLFKKPEAPADSGKGFTLAQKMVGRACGLPEGKGVRPGTYCEPKMTTV
GSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPIDVNTHHTLPDFIMNRSGVS
LRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPES
VLVRFKGQMQPGITLRDLVHAIPYYAIQQGLLTVEKKGKKNIFSGRILEIEGLNQLTVEQ
AFELSDASAERSAAGCTIKLPEDSIAEYLKSNITMLRWMISEGYGDARTLERRAQAMEAW
LADPKLLEADKDAEYAAVIEIDLAEVKEPVLCAPNDPDDARLLSTVAGEKIDEVFIGSCM
TNIGHFRAAGKLLDKVKGGIPTRLWLAPPTKMDAHQLTEEGYYGIYGKAGARMEMPGCSL
CMGNQARVQTGSTVVSTSTRNFPNRLGDATNVYLASAELAAVASIIGKLPTVAEYMEYAK
NIDSMAADIYRYLSFDQIAEFRDAAEKAKIKVVEV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory