PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2304 (1199 amino acids)

SeqID: GFF2304 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2304
MFDKLLIANRGAIACRILRTLRGLDVKSVAVYSEADAASLHIQQADEAHSLGEGPAAQTY
LVVEKILRIARETGASAIHPGYGFLSENAAFAEACEAAGIAFVGPTPEQLRMFGLKHTAR
ALAKQRGVPMLEGTELLDSLADALGAAEQVGYPVMLKSTAGGGGIGMRVCRSAAELAEAF
DAVKRLGQNNFSDAGVFIEKYIQRARHLEVQVFGDGRGEVIALGVRDCSVQRRNQKVLEE
TPAPNLPAGMAEALCEAAVKLAKAVSYRSAGTVEFVYDAEAEQFYFLEVNTRLQVEHGVT
EQVWGVDLVRWMIELAAGDLPPLVELARALKSSGHSIQARLYAEDPGRDFQPSPGLLTVV
DFPKGDGKALRIDTWVEAGCEIPPYFDPMVAKLITWAPDRESARAALDTALDETLLYGVE
SNRAYLRQILGYAPFAEGRPWTRCLEGLTYRATTFEVISAGTQTTVQDFPGRLGYWAVGV
PPSGPMDNRALRLGNALLGNPEDAAGLEITMSGPILRFNTDAVVAITGAEIPVKLDDAPQ
PMCTAILVKAGSTLAIGTIVGAGARSYLAVRGGLQVPDYLGSKSTFTLGQFGGHAGRALR
AGDVLHLAPLTDSACGASLPAALCSALPAVRELRVIYGPHGAPEYFTEGYIQTFFATDWE
VHFNSSRTGVRLIGPKPEWVRESGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPDGPS
LGGFVCPVTIIEADLWQLGQLKAGDRVRFVPVDVASARQLAQAANIECARLAAAPVPCVP
VALQSPIVLDIGEADTRLVARLSGDTHLLLEIGAPELDLVLRFRGHALMQALEAKQLDGV
IDLTPGIRSLQVHYQPETLALQTLLDIVAGEWDAVCAAQDLKVPSRIVHLPLSWDDPACT
LAIEKYMTTVRKDAPWCPSNLEFIRRINDLPDLDEVYRTVFEASYLVMGLGDVYLGAPVA
TPLDPRHRLVTTKYNPARTWTAENSVGIGGAYMCVYGMEGPGGYQFVGRTLQMWNRYRAV
EAFGGLPWLLRFFDQIRFYPVSAEQLLKIRRDFPLGRYPLKIEQTELRLSDYQDFLAAEA
EGIDAFRRQQRAAFDAERQRWIASGQAHFESEEVAADLGEDAPLGSGLHGIESHIAGNLW
QVSVAEGARVEAGDVLVILESMKMEIPLTAPVAGVVKEVRAQPGSPVRAGQRVVVIEEA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory