PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2321 (1628 amino acids)

SeqID: GFF2321 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2321
MNALTVASKDQFFEQLADAFAKKISKTEAKKISEFAKQHYAHIPLEELVSRRFADTYGAV
LAAWQFLQKRSAEETPVAVFNPDLESDGWQSTHTVVFILHPNIPFLIDSLRIAINHREIG
THSIQHSILQVNRDQNGKLEKLHTSKKKASGSDYEAFIVLEIDRHSNPEDLRDLEDTLQN
VLHEVRIAVSDFPVVTEKVNEILGELDNTTAGINEEQKEEARAFLEWLARDHFTFLGYDE
YDFAKDKSGMVVRRVENSELGILRVNNERPDRVRLNELPQRTRHEMTRSDDIFIFAKSAQ
RSRVHRPAYPDYIAVKKFNSKGEVVGERRFLGLYTARVYNERPDEIPLLRRKFQSVMKRS
GFLRDDYAGKELEQILTVYPRDELFQIEQDELLKVAKSILYIQERRRIELFLREDVYGQF
VTCLAFFPRDIYNTELRLKVEQVLVDRLGAEDVEFVTHFSESVLARVQFTIRVPQVENRQ
LPTAEIREKVIELAQSWRDGLSEALSEAWGEEQGNELYRLWAGGFPASYTDMFSPRRAAI
DLEHIASSANNHDLAMSFYRALEEDESTLHFKLFYPDEPLPLSDVMPIFDNLGFRVIGEH
PFEVIDRHNKTVWIHDFTLQAHQGTVVDIHRIRPIFEELFRRVWYGEAENDAFNRMLLSS
YMSWREIALLRTYARYMRQIRFSNSQTFISNTLVNHVELTRLLLEFFEIRFNPERYQSPG
KSQAAQQKLEIEFNAGLENVENLSEDRVLRLYLELIQATLRTNYYQHGESGGPKPYISVK
FDPSRIPDMPLPMPMFEIFVYSPRVEGVHLRGGKVARGGLRWSDRFEDYRTEILGLVKAQ
QVKNAVIVPVGAKGGFVAKRLPDPSDREAFQAEGIEAYKTFIRGLLDITDNLVDAGIAPP
ERVIRHDDDDHYLVVAADKGTATFSDIANGLAAEYGFWMGDAFASGGSNGYDHKKMGITA
RGAWVSVERHFREMGINPGLDEFTAIGIGDMGGDVFGNGMLCSEKTKLVAAFNHVHIFVD
PSPDPEKSYKERMRLFGLPRSAWTDYDSKLISKGGGVFSRNSKSIPVSPEMKKLLGIKSD
RVPPNMLISHILKAQVDLLWVGGIGTYVKAASESHSDVGDKANDGLRINGSDLRCKVVGE
GGNLGLTQLGRIEFALKGGRLNTDFIDNSGGVDCSDHEVNMKILLNRAVAMGDLTNKQRN
IMLEEMTDDVAELVLKNNYRQTQAISIASEDAATRLEEYRRLMNTFESEGKLNRALEFLP
DDETLSERKLDKKGLTRPELSVLISYVKGDLKQTLIDSTLPDDPLLAGEMYKVFPRDLTQ
KFSKELGEHQLRREIIATQIANDMVNHMGITFVERLNQSTGADAASIALAWIIARDVFRI
DNWWDRIEALDFHVSAQLQMELMQDLMRLMRRSVRWLLRNRRAELSIQHHMERFADSVWA
ITAGLPEYLGDQAKTTWEKRHQALVDAGLPSELASVVSGTGHLYSSLGIIEAHEASGMPL
KTVANLYYELGDRLDLNWFASAIASLQPGSHWQALARESFREDLDWQQRALTTGVLKLAD
KPEDVPACVEAWLSRHQQMIDRWKSMLSELKGVREPEYAMFSVALRELLDLAQSTMHQPH
AEVEVQTN