PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF233 (612 amino acids)

SeqID: GFF233 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF233
MPDYRSKTSTHGRNMAGARALWRATGMKDEDFKKPIIAIANSFTQFVPGHVHLKDLGQLV
AREIEKHGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS
NCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLASHGLDLVDAMVIAADESASDEKVA
EYERSACPTCGSCSGMFTANSMNCLAEALGLALPGNGSTLATHSDREQLFLRAGRTVVEL
CKRYYGEGDESVLPRNIASRRAFENAMTLDIAMGGSTNTILHLLAAAQEAEVDFDLRAID
ALSRKVPQLCKVAPNIQKYHMEDVHRAGGIFSILGELARGGLLHTDVPTVHSRTLAEGIA
QWDITQTQDEAVHTFFKAGPAGIPTQTAFSQSTRWDSLDDDRENGCIRSVEHAYSQEGGL
AVLYGNIALDGCVVKTAGVDESIHVFEGTAKIYESQDSAVKGILADEVKAGDIVIIRYEG
PKGGPGMQEMLYPTSYLKSKGLGKDCALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVR
DGDKVLIDIPNRSIQLQVSDEELSHRRIEQDKKGWKPAQPRTRKVTTALKAYALLATSAD
KGAVRNKALLDG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory