PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2382 (652 amino acids)

SeqID: GFF2382 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2382
MSDILWQPSPERIAHTRMDQFRRHINERYSVQLSDYPALHQWSIDRRPDFWRAIVDYFDV
QFRSPPTAVLIEDAEMPSAQWFPGATLNFAEHLLRRRDGHPAVVALSEDGQREQLTYAEL
AAHVAGLQHSLRAAGVVQGDRVAACMPNTWQTLVGMLATTSLGAIWSCSSPDFGTQGVID
RFGQIEPKVLITCAGYRYAGKDIDQSAKLNEILERLPSLEQLIIVPYARPQAQVSDYQTH
AGVALWQDFYQPGGEPQFVAVPFDHPLYILYSSGTTGVPKCIIHGTGGVLLTHLKEHGLH
ADLSRDDCLFYYTTCGWMMWNWLVSVLAIGATAVLYDGSPFHPGPERLIDLIDAEKISVF
GTSPKFLATLEKAGLQPRLSHDLGSLKGLISTGSPLSPQSYDYVYREIKAQLCLSSMSGG
TDIVSCFVIGNPVLPVRRGEMQCKSLAMAIEVWDDQGRPLIGEKGELVCTRHFPAMPIGL
WNDPECKKLRASYFSQFPGVWAQGDYAEQRPNGSLLIHGRSDAVLNPGGVRIGTAEIYRQ
VEKIPQVQESLAIGQRWQEDVRVVLFVRLNEGVELDETLEQQIRQVIRANTTPRHVPAKI
LAVTDIPRTISGKIVELAVRNVVHGEPVKNTDALANPQALEQFRDRPELAQG