PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2428 (398 amino acids)

SeqID: GFF2428 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1174676: Acetyl-CoA acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2428
MNDTVALQDVVILSGARTAIGDFGASLSGYSPAELGTFAGRAAIERAGVAAEEIDHCIFG
HIITTSPQDAYLARHVALNCGLAEHSAAMNVNRLCGSSVQSLISAAQMIQAGASRLALAG
GAESMSQGAYLLPKLRFGQRMGDAAAVDLTIGILSDPFGSGHMGITAENVAARYGFTREQ
LDQYACDSHRKAANAMAAGHLTTQIVSVPINKGRAAGEFSQDEHVRPDTTLEGLQKLRAA
FKKDGMVTAGNASPLNDGAAALVLGSAQEAARLGLRPRARFLSYAFAGVEPQLMGLGPIP
AVQRALTAANLRLADIDIIESNEAFAAQALAVAQSLEFDPDKVNVNGGAIAHGHPVGSTG
SILTLKALYELERLGKRHALITMCIGGGQGIALILERL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory