PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2441 (438 amino acids)

SeqID: GFF2441 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 115118: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2441
MNRLKGFDLLALGFMTFALFLGAGNIIFPPSAGMASGEFVWHAALGFLLTGVGLPLLTVV
ALARVGGGMDRLTAPLGNVAGTVLAVAVYLAIGPLFATPRTAVVSFEMGIAPFSGNAGMP
LFLYTLVFFAAMLFLVLNPGQLVNRIGKFITPVLLAALLVLGGAAIFAPAGEVGAATESY
RASPLIKGFLEGYLTMDTLGALVFGIVIATAIRDRGVTEPALVTRYSMIAGVIAAIGLSL
VYLALFYLGATSQGIAAGAENGVQILTTYVQHTFGTPGSLLLAVVITLACLTTAVGLTTA
CGEFFSALLPVSYRTVVVVFALFSLLVANQGLTQLISVSVPVLVGLYPLAIVLVALSLLD
RFWVSPTRVFVPVMGVTLIFGVVDGLAAAGLGNWVPALFAQLPLADQSMGWLVPVLVMLV
LAVATDRLLGRADRQRHA