PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2444 (478 amino acids)

SeqID: GFF2444 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118670: Dihydrolipoyl dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2444
MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYQGKDGKTALGGTCLNVGCIPSKAL
LDSSYKFHEAHESFKVHGISTGEVAMDVPTMVARKDQIVKNLTGGVSALLKANGVTVFEG
HGKLLAGKQVEVTGLDGNVQTLAAENVILASGSTPVNIPPAPVDQKVIVDSTGALDFQGV
PGKLGVIGAGVIGLELGSVWARLGAEVTVIEAMDKFLPAADEQISKEAFKILSKQGLKIL
LGARLTGSEVKGDQVTVSFTSAEGEQQMTFDKLIVAVGRRPVTSELLAADTGVDMDERGF
IFVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVMVAERIAGHKTQMNYDLIPSVIYTH
PEIAWVGKSEQVLKAEGVEVNVGTFPFAASGRAMAANDTAGLVKVIADAKTDRVLGVHVM
GPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTMSEALHEAALAVNGHAIHIANRKKR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory