PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2473 (891 amino acids)

SeqID: GFF2473 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2473
MPSLDSLKCRRSLEVAGKTYHYYSLPDAAAQLGDISRLPTSLKVLLENLLRWEDNQTVRA
DDLKSLVSWLDTRSSTMEIQYRPARVLMQDFTGVPAVVDLAAMRDAVAKAGGDPQKINPL
SPVDLVIDHSVMVDRFGSDQAFEQNVEIEMQRNGERYEFLRWGQQAFDNFAVVPPGTGIC
HQVNLEYLGQVVWTREENGETFAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPEVIGFRLTGKLNEGVTATDLVLTVTQMLRKHGVVGKFVEFYGPGLDHLPLADR
ATIGNMAPEYGATCGFFPVDQVTIDYLRLTGRNEERIALVEAYSKAQGMWRDSNSPAPEF
TATLELDLSQVRPSVAGPKRPQDRVTLGDIGANFDLLLETSGRQQQADTDFAVAAEQFQL
KHGAVVIAAITSCTNTSNPNVLMAAGLVAKKAIERGLQRKPWVKTSLAPGSKVVTDYLER
AGLTRYLDELGFNLVGYGCTTCIGNSGPLPDAIGQAITDNDLIVSSVLSGNRNFEGRVHP
LVKANWLASPPLVVAFALAGTTRIDMDREPLGYDAQNQPVYLKDIWPSSAEIAEAVARID
GEMFRSRYADVFSGDEHWQKIPVSAGDTYAWNANSSYVQNPPYFEDIGQPPTPPADVENA
RVLAVFGDSITTDHISPAGNIKASSPAGLYLQSLGVAPEDFNSYGSRRGNHEVMMRGTFA
NIRIRNEMLGGEEGGNTLYQPSGEKLSIYDAAMRYQAEGVPLVVIAGKEYGTGSSRDWAA
KGTNLLGVKAVIAESFERIHRSNLIGMGVLALQFVNDQTRQSLGLNGMEKLSIRGLDADI
KPRQMLTVDVERADGSRDSFQVLSRIDTLNEVQYFKAGGILHYVLRQLIAH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory