PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2510 (1115 amino acids)

SeqID: GFF2510 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129007: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            6.58
    OuterMembrane          2.25
    Periplasmic            1.02
    Extracellular          0.09
    CytoplasmicMembrane    0.06
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2510
MAKKPNAATFIKDPLWYKDAVIYQVHVKSYFDSNNDGIGDFPGLIAKLDYIADLGVNTIW
LLPFYPSPRRDDGYDIAEYRGVHSDYGTMADAKRFIAEAHKRGLRVITELVINHTSDQHP
WFQRARKAKPGSAARDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQ
PDLNFDNPQVMKAVLSVMRYWLDMGIDGLRLDAIPYLIERDGTNNENLPETHDVLKQIRA
EIDAHYPDRMLLAEANQWPEDTQLYFGDKKGDDGDECHMAFHFPLMPRMYMALAQEDRFP
ITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDKERDYLWNYYAADRRARINLGIRRRL
APLMERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRNGG
FSRADPASLVLPPIMDPQYGYPSVNVETQAQDPHSLLNWTRRMLAVRKQSKAFGRGSLKM
LSPSNRRILAYTREFTGEDGRNEIILCVANVSRSAQAAELDLSAFAGMVPVEMLGGNAFP
PIGQLNFLLTLAPYGFYWFVLAPENQMPSWHVEPAQSMPDFTTLVLKKRMEELLDEPCRA
SLEQTVLPAWLPKRRWFAGKDTAIDSVRIAYGVRFGDPQHPVLLSELEVTAGGQVSRYQL
PFGFLGEDQFTSALPQQLALARVRRVRQVGLVTDAFSLEHFVRTVIQGLQAGTLLNTHEG
ELRFAATPHLAKLQLADESEVRYLSAEQSNSSVVVGECLVLKLIRKVASGVHPELEMSAY
LTEAGYPNISPLLGSMIRHDAEGQDNLLMIAQGYLSNQGDAWGWTQNNLERAIRDELAEA
MSEQEQHYNALGELADFAGLLGQRLGEMHRVLGAKTTNKDFKPEVTTVKDTQAWAKDVGA
QLDRALQLLKLHQSQLNLADQALVSEMLAQKKAIASHVQALAKATAGGLRIRVHGDLHLG
QVLVVKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMALNVQGVDHSPE
ADQARKRVTDRYLKEARQAFIQAYQSATSTLAHDWQDAKGQDAALTLFSLEKAAYEVAYE
AENRPTWLPVPLQGLHGLLSGLAPISKTARGGETS