PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2583 (557 amino acids)

SeqID: GFF2583 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114919: Choline dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2583
MEYDYIIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAYPLQGTRY
NWAYKTDPEPHMNNRRMDCGRGKGLGGSSLINGMCYIRGNALDYDNWAKAPGLEDWTYLD
CLPYFRKAESRDIGPNDYHGGVGPVSVTTPRADNNVLFQAMVEAGVQAGYPRTDDLNGYQ
QEGFGPMDRTVTPQGRRASTARGYLDQARERPNLTIETHAVTDRVLFEGKRAVGVRYLRD
RKDPYIARARREVLLCGGAIASPQILQRSGVGPGALLRRVGVKPVHELPGVGQNLQDHLE
MYLQYECKQPVSLYPALKWWNQPAIGAEWLFLGSGIGASNQFEAGGFIRSSDEFEWPNIQ
FHFLPVAVSYNGSNAHDGHSFQAHVGSMRSPSRGRIEIRSTDPAEDPSILFNYMAHEQDW
REFRDGIRLTREIMNQPALDPYRGRELSPGIEAQSDAELDAFVREHAETAYHPSCSCKMG
TDDMAVVDGQGRVHGMEGLRVVDASIMPQIITGNLNATTIMIAEKIADRIRGREPLRRST
AKYYVAGNVPVRQPPRR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory