PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2603 (391 amino acids)

SeqID: GFF2603 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598209: fatty-acid oxidation complex beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2603
MSLNPRDAVIVDFGRTPMGRSKGGMHRNTRAETMSAHLIDGVLARNPKIDPAEVEDVIWG
CVNQTLEQGWNIARMASLMTRIPHTSAGQTVSRLCGSSMSALHTAVQAIQTNNGDVFVIG
GVEHMGHVSMMHGVDPNPQLSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGERSHRLA
HKATLEGNFKDEIIPMEGYDEDGFLKVFDYDETIRPDTTLESLAALKPAFNPKGGTVTAG
TSSQITDGASCMIVMSAQRAKDLGIQPLAVVRAMALAGVDPAIMGYGPVPSTQKVLKRAG
LTMDDISHVELNEAFAAQALPVLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTL
LNVMKQNNGTIGVATMCIGLGQGISTVFERV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory