PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2604 (552 amino acids)

SeqID: GFF2604 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598794: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2604
MADRFRVTLAQLNPTVGDLAGNANKAREAWAAGRDAGADLVALPEMFITGYNTQDLVQKP
VFHQAAIAEVERLAADCADGPALAVGSPWVADGKLFNAYLILKGGKITTQVLKHHLPNAT
VFDEVRIFDAGPLGGPYAVGNTRIGSPICEDGWYEDVAETLAETGAEFLLIPNGSPYFRN
KMDVRFNHMVARAVETDLPVIYLNMVGGQDDQVFDGGSFVLNPGGALALQMPVFDEAIQH
LDLERTAEGWRAVEGPKASLPDEWEQDYHVMTLSLRDYMRKTGFKKVLLGLSGGVDSAIV
ATIAVDALGAENVRCVMLPSEYTSQESLDDAEAVAKALGVHYDYVPIAEGRAAITNTLAP
LFAGLDEGLTEENIQSRLRGLLLMAMSNKFGEMLLTTGNKSEVAVGYATIYGDMAGGYNP
IKDLYKTRVFETCRWRNDNHRDWMMGPEGEVIRPNVIDKPPSAELRDDQKDSDSLPDYPE
LDALLEILVDRDGSIADCVAAGFSRENAKRVEHLIYISEYKRFQSAPGARLTPRAFWLDR
RYPIVNRWRDPS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory