PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2610 (409 amino acids)

SeqID: GFF2610 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2610
MSNTSLEKSKIRILLLEGVHQSAIDTLNAAGYTNIEYLSHSLAEEELIEKIADAHFVGIR
SRTQLTEKVFEAAKKLVAVGCFCIGTNQVDLQAATRRGIAVFNAPFSNTRSVAELVLAQA
ILLLRGVPEKNAKAHRGEWLKSAKDSYEIRGKKLGIIGYGNIGTQFSVLAEGLGMDVYFY
DVVSKLSIGNATQVGTLQELLNIADVVSLHVPETPATKYMFKAEQFAQMKPGSILMNASR
GTVVDIDALADALGSGKLLGAAIDVFPVEPKSNDEEFVSPLREFDNVILTPHVGGSTIEA
QANIGREVAEKLAMYSDNGTSVSSVNFPEVALPSHPNQHRLLHIHENVPGVMSEINQVFS
ENGINVCGQYLQTKEDIGYVVVDVNKEYGELAQEKLLKVKGTIRCRVLF