PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2621 (378 amino acids)

SeqID: GFF2621 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128794: molybdopterin synthase sulfurylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.47
    Cytoplasmic            1.38
    Periplasmic            0.13
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    CytoplasmicMembrane    8.47

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2621
MLSIVVLAALIWWGGRFLGLGHTLRLGLLGVLYIAILAVHLTLPETAPLRGATGGSAAPW
LVLAGMVVLVLAYRHLLRRLRSRAQPEEDAEGGAKPRPDKFSESELDRYARHIVLRELGG
PGQKKLRKARVLVIGAGGLGAPALQYLAAAGVGTIGVIDDDLVENANLQRQVIHRDQDIG
IPKVFSAQAAMEAQNPYVTVRPYHRRLDADIATDLFGDYDLILDGTDNFETRYLVNRTAV
ALGKPLISGALSQWEGQISLFHPTAGGPCYQCIFPEAPAAGLAPSCSEAGVVGPLPGVVG
AMMALEAIKAVTGAGQTLQGEILIYDGLYSESRKITLSQRSDCPICAGGAGPVEETGKKE
TRKETGALHSDAGSSETI