PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2629 (547 amino acids)

SeqID: GFF2629 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2629
MTISPFAGKPAPAQLLVDIPRLVTAYYTGQPDAAISTQRVAFGTSGHRGNSFELSFNEWH
VLAISQAICLYREAQGINGPLFVGLDTHALSTPAGASALEVLAANGVHVMLAEGDEYTPT
PAISHAIICYNRGRTSGLADGIVITPSHNPPQSGGYKYNPPNGGPADTHVTKWIEAKANE
LLAKKLAGVKRITHAQALKADTTHRHDYLNTYVADLVNVIDMDAIRSADLRLGVDPLGGA
GVRYWSAIAEHYRLNLEVVNTEVDATFRFMCVDWDGQIRMDPSSSYAMQGLIGLKERFDV
AFACDPDHDRHGIVTPSGGLLAPNNYLAVSIDYLFQNRPDWRADAAVGKTVVSSGLIDRV
AARIGRRLYEVPVGFKWFADGLFDGSLGFGGEESAGASFLRKDGTVWSTDKDGLIPALLA
AEMTSRKGQDPSQIYRGLTDALGEPFAIRVDAKATPAQKALLGKLSPDQVTSTELAGESI
QQILSHAPGNDQAIGGLKVMTENGWFAARPSGTEDIYKIYAESFIGEDHLKQLVEEAQVL
VDGAISQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory