PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2655 (469 amino acids)

SeqID: GFF2655 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2655
MAARTLYDKLWQRHLVDELPDGSALLYIDRHLLHEVTTPQAFSGLRSAGRKPWRIPANVA
VPDHAVPTRKRELGVAGIADRVARKQVETLSRNCEEFGIPLIELEDARQGIVHVVGPEQG
LTLPGMTIVCGDSHTSTHGAFATLAMGIGTSEVEHVLATQTLRTQKQKNMRVVFEGQPGF
GVTPKDLILALIGRIGTAGGNGYAIEYAGAAIRNLSMEGRMTICNMSIEAGARAGMVAYD
RVTEQYVEGRPQAPVGERLEQAREYWRTLVSDAEADFDREEHFPLEALVPQVTWGTSPEM
VTGIDGKTPDLSQLAPEKRESARRALDYMGLEPGRPLKGLSIDKVFIGSCTNARMEDLRA
VANLVQGQKVHRSVKQALIVPGSGQVRLQAEREGLDMIFRNAGFEWRAAGCSMCLGMNDD
RLNPGERCASTSNRNFEGRQGKGGRTHLMSPLMAAAAALAGEITDVREV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory