PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2666 (427 amino acids)

SeqID: GFF2666 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2666
MADSVRPEASMHILVLGAGVVGTTTAWYLQKQGHQVTVVDRQNQAGLETSYANGGQISVS
HAEPWANPSAPLKVMKWLFQPDAPLLFRPRLDPAQWRWALSFLGQCTLARAAHNIRQMVN
LGTYSCSQLQALREEAGIEYNHLEKGILHFYTNPAEFDGAMEPTRIMQDLGCDRQIIDAD
RAVELEPALKPIRNRIAGATYTSEDESGDARMFTQNLAKRCAEAGVEFRYGTEILSFERA
GERVLGIQTLRDGHHETLRADAYVLSMGSFSAALASQLGIFLNIYPAKGYSITVPVKNEE
AAFNVSLTDDEYKLVYSRLGDRMRVAGTAELNGYSRKLNYTRCRAIVRRTAEVMPEAGYW
DQAEFWTGLRPATPSNVPYIGKSHFANLYLNTGHGTLGWTHSCGSAAALADIIDGRKPEV
DFTFSGL