PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF269 (307 amino acids)

SeqID: GFF269 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600366: carbamate kinase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF269
MRIVIALGGNALLRRGEPLSADNQRENVRTACMQIARIAAGNELVVAHGNGPQVGLLALQ
GAAYKDVPVYPLDVLGAETEGMIGYIIEQELGNLLPFEVPMATLLTQVEVDPEDPAFKQP
SKPIGPVYSREEAERLAEEKGWAIAADGDRFRRVVPSPRPKRIFEIRPIGWLLDKGSVVI
CAGGGGIPTVYDQSGRLQGVEAVIDKDLCSALLAEQLKADLLVIATDVDGAYLDWGTPQQ
RRISEAHPDQLQSRGFAAGSMGPKVQAACEFARNTGNVAVIGSLEQIEAIIKGQAGTRVS
LEAAGLV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory