PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2712 (556 amino acids)

SeqID: GFF2712 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2712
MSDNNNATGHQEFDYIIIGAGTAGCLLANRLSANPENRVLLIEAGGRDNYHWIHIPVGYL
YCIDNPRTDWRFRTEPDPGLNGRSLIYPRGKTLGGCSSINGMLYIRGQARDYQQWAEITG
EDAWNWDNCLPDFMRHEDHYRLDEGGDADPEHRKYHGHGGEWRVEHQRLKWKVLEDFATA
CVEAGIPRTRDFNRGDNEGVDYFEVNQRSGWRWNTSKAFLRNAEKRSNLTLWHSTHVLGL
ETENAGSGPRCVGVRVERSGGDDVIARAKREVILSAGAIGSPQLLQLSGIGPAHLLKEHG
IDVVADLPGVGENLQDHLQIRSVYKVKGVTTLNTMANSLIGKARIGLEYLLTRSGPMSMA
PSQLCLFTRSSEEYDYANIEYHVQPLSLDAFGQPLHNFPAITASVCNLNPTSRGTVRIRS
NDPKQAPAISPNYLSTPEDRKVAADSLRVTRRIAEQPAFMQYQPEEFKPGLEYQTDDELA
KLAGDIGTTIFHPVGTTRMGRADDEQAVVDPHLRVRGVAGLRVVDAGVMPTITSGNTNSP
TLMIAEKAARWILAGD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory