PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2721 (511 amino acids)

SeqID: GFF2721 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230912: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2721
MPHSAQPVSELYDVAVIGGGINGVGIAADAAGRGLSVFLCERDDLASHTSSASSKLIHGG
LRYLEHYEFRLVREALAEREMLLAKAPHIVKPMRFVLPHRPHLRPAWMIRAGLFLYDNLG
MRKKLPASRGLRFGSESPLKPVITRGFEYSDCWVDDARLVVLNAMAAREKGAHIHTRTQC
LSAKRAGGIWHVELQREDGSRFSLRAKALVNAAGPWVAQFIGENLQQRSPYGIRLIQGSH
IIVPKLYEGEQAYIMQNEDRRIVFAIPYLDRYTMIGTTDREYRGDPAKVSISEEEIAYVL
GVANTHFRKQLEPRDIVHTFAGVRPLCDDESDNPSAVTRDYTLSLAAEEKQAPLLSVFGG
KLTTYRKLAESAMAQLKPFFPAMGGSWTAQAALPGGEDMSTADALTEELVAKVQGLKLPL
AKRWATLYGNRVWRMLGEAHSLDALGEDLGQQLYAQEVEYLRREEWATQVDDILWRRTKL
GLAFSEPEKARLARYLAERPIAETARNSDAA