PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2744 (375 amino acids)

SeqID: GFF2744 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2744
MTPLAGLKVVELARILAGPWIGQSLADLGAEVIKVESPEGDDTRRWGPPFIERDGDKTAA
YYYAANRGKSCVTADFRTKDGKQTVLELIRDADILIENFKVGGLAKYGLDYDSLKAVNPR
LIYCSVTGFGQDGPYAARAGYDFLLQGMSGLMSITGAPEGEPQKVGVAITDIVTGLYGTI
GILAAVEQRHSTGRGQHIDMSLLDCATAVLANQNMNYLATGTSPTRMGNEHPNIAPYQVM
AVRDGHVILAVGNDGQFARLCAVLNMAGLADDPRFASNQLRVANRVELTPMLAAALAQWG
QADLLAALEAATVPAGPINTIGQAFDDPQIKHRQMQIAPEDVPGVRGPWVFSDAELALEK
SAPILPVAQDMSQGD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory