PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2745 (1128 amino acids)

SeqID: GFF2745 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2745
MARMVEESRSWDDDLHGELVRSFGESIGGRYAQVFSGGFPSAYRARFPVSEALADIGQIQ
SIAVSTDVPMRFYQPRDPSETGFHFKLYSEGQPVILSDVIPILENLGMRVLGEHPYRVRR
RDGENFGVSDFTVELHDRCRQADLSAARPLIQSAFREIWNGFAENDDFNQLIMLCGLNWR
EVALIRAYARYVKQLRFGFSQPFIAETLARHPDITSRLVAFFFNRFEPGVKGRKSRTEKL
EAELRDSLEAVASLDDDRILRRFFMLIRATLRTNYFQVREDGGFPSYLSLKLDPSSIPDI
PRPRPKFEIFVYSPRIEGVHLRAGPVARGGLRWSDRIEDYRTEILGLVKAQQVKNSVIVP
AGAKGGFVVKQPPRDGSREAVREEGVACYQTFIRGLLDITDNLDDGQVVPPANVVRYDSD
DTYLVVAADKGTATFSDIANALAAEYNFWLGDAFASGGSEGYDHKKMGITARGAWESVKR
HFLEKGTDTQSDEFTVVGIGDMGGDVFGNGMLLSDQIRLIGAFNHQHIFVDPDPDAAASF
RERERLFKLSGSSWADYDTQLISDGGGVFSRSMKSIPVSSQMRKVLGIKARSLSPADLIS
ALLKAPVDMLWNGGIGTYVKAPSESHEDVGDKTNDALRIDSNELRCKALGEGGNLGVTQK
ARIDFARRGGSVNSDFIDNAGGVDCSDHEVNIKILLNDLVHRQLMSLPERNRMLRAMTSE
VAELVLRNNYRQAMALSLAQNPAVATADQYERLMRRLETEGKLDRSLEFLPSDEELQARR
EHGGGLTRPELAVLVSYAKIELKQALVASPIVHDPRFNSALHSAFPASLLAAFPEAVGAH
PLRAEISATQIANDMVNRMGITWFDRIRSATGADAGRIASAYLISLRIHDVDAHWESMEL
LDGKIDAGVQADLFADAIRLVTRSTSWLLQNRRQALDPVSCIDHYRAPMSDVLASKSRLE
SVIPASRWYERYAEYCERMVPEDLSAWCASAESRYWLMDMVEIARQLDEKLESVAWVYFT
LGESLNLTWLDRQMRAFRANGHWQVLATIHFRDELDHQLRNLTLSVFSEPVDGDGTPEKR
IEAWRGNKRMLLARWERMLNDMQAANDVDCAVFSVAHGVLRELALKAA