PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2757 (452 amino acids)

SeqID: GFF2757 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121677: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2757
MAYDFDLYVIGAGSGGVRAARFAAGFGAKVAVAESRYLGGTCVNVGCVPKKLLVYGAHFA
EDFEQASGFGWSLGEANFDWATLIANKDREINRLNGIYRNLLVNSGVTLHEGHARLVDAH
QVEINGERFTAKHVLIATGGWPQIPEIPGHEHAIGSNEAFFLKELPKRVLVVGGGYIAVE
FAGIFHGLGAQTTLLYRGDLFLRGFDGSVRTHLKEELTKRGLDLQFNADIERIDKQADGS
LKATLKDGRVLEADCVFYATGRRPMLDNLGLENTGVKLDKRGFIEVDDQYQTADASILAI
GDVIGRVQLTPVALAEGMAVARRLFKPEQYRPVDYAMIPTAVFSLPNIGTVGLTEEEAKE
KGHKVQIFESRFRPMKLTLTECQEKTLMKLVVDADTDQVLGCHMVGPDAGEIVQGLAIAL
KAGATKQHFDDTIGVHPTAAEEFVTMRTPVAD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory