PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2791 (790 amino acids)

SeqID: GFF2791 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Extracellular                 [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          3.91
    Cytoplasmic            3.76
    Periplasmic            2.14
    CytoplasmicMembrane    0.10
    OuterMembrane          0.09
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2791
MAVVRAGCRSVRSDLTQNDRPRVQAGPQHPVHPVQRQSLTQVSDIAEKRLWNMAENSTPD
ILYTIVDEAPELASASLLPIIRSFAAAAGVSVGTKDISLAGRILATFPEALSDAQRQSND
LAELGQLVKTPEANVIKLPNISASVPQLTAAIAELQAQGFGIPDYPADPATDAEKEIRAR
YDTIKGSAVNPVLREGNSDRRAAKAVKNFAQNNPHSMGKWSADSKTKVSSMLGNDFYANE
VSATISAAQAGTAKIEFVGKDGAVTVLKDSWPLEEGTVADATFMSAKALSSFLKDAIEDT
KADGTMFSLHMKATMMKVSDPIIFGHAVKAWLGPVWDKFGAEIEAAGGSANSGLGAVLAT
IDGLPNGDAIKAEIAALDRPSMYMVDSDKGITNLHVPSDVIIDASMPAVIRAGGKGWDEA
GNKGDTNCVIPDRCYSTVYDESINFFKANGALDVTTAGSVANVGLMAQKAEEYGSHPTTF
EAPADGTIRIVLANGETLHAHEVEAGDIWRSCTVKKAPIENWIELAMDRQRLTGSEAIFW
LDENRAHDAELIKYVTPALEAAGKSDLFQIMAPREATAQSLKTITAGKDSIAITGNVLRD
YLTDLFPILELGTSAKMLSIVKLMNGGGLFETGAGGSAPKHVQQLVEENHLRWDSMGEFC
ALGESLNFLADSKGNAKAGVLGAAAEAATQGILDHNRSPSRKVGEPDNRASHYWFARYWA
EALAAQGDDAELAAHFAPIAAELAAKEEAILSELAEVQGKAVDLGGYFHADPVKTAAVMR
PSATLNGIIG