PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2850 (336 amino acids)

SeqID: GFF2850 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596099: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2850
MIDFRSDTVTRPTPEMREAMASAEVGDDVYGDDPTVNSLQAYAAERLGFEAALFTATGTQ
ANLLAIMSHCGRGDEYLCGQSAHNYKYEGGGAAVLGSVQPQPIENEPDGSIDLEKARAAI
KADDFHFAVTRLLSLENTIGGKVLPLDYQAQARAFCDEHGLLLHLDGARIFNAAVKSNCD
VTEITRHYDSVSVCLSKGLGAPVGSLLLGSESFIKRATRLRKMVGGGMRQAGILAAAGRI
ALEKGPLRLLEDHENAEYLSNGLAKIPELEVNPASTQTNIVYARCKAGQASQLKDYLAEQ
GILITAGDPIRFVTHQDVSREDVDTLLTAIRQFYPS