PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2856 (537 amino acids)

SeqID: GFF2856 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2856
MIFDYIIVGGGSAGAVMAARLSEDPDVSVCLLEAGGKGDHLLTRAPAGVVAIMPGHGKIN
NWALNTEQQPELAGRRGFQPRGRGLGGSSLINAMLYVRGHSADYDGWAELGCDGWGWDDV
LPYFRKAECHEGGASEYHGADGPLHVCKQRSPRPISEAFIEAAKERGYPASEDFNTGDNE
GVGLFEVTQFHDTERNGERCSTAAAYLYPIIEQRNNLKVVTGARATRILFNGKRASGVEY
RLKGQSLTASANREVILSAGAFGSPQLLQLSGVGNPDDILPHGIPMVHELPGVGRNLQDH
LDFILAYKSADTDNFGFSLTGMKNMLRHSLQWRTDGTGMIASPFAEGAAFLKSDPEQDKP
DLQLHFVVSIVEDHARKLHWGHGFSCHVCNLRPKSRGRVFLLSADPMADPGIDPNYLSDP
DDLNLTIKGAKITREILEGPALSPYRQSEMFGVHDGMSDEEWERHIRARADTIYHPVGTC
KMGIDDLAVVDSSLKVHGLEGLRVVDASVMPTLIGGNTNAPTIMIAEKNADTIRTGG