PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2934 (341 amino acids)

SeqID: GFF2934 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596099: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2934
MSDIDLRSDTVTQPTADMREAMFRAETGDDVYGEDPTVSRLERQLAGDLGFSAAMFVPSG
TMSNLLALMAHCERGDEYIVGQQAHTYKYEGGGAAVLGSIQPQPIEMEADGTLDLRRIEA
AIKPDNFHFARSRLLVLENTMHGKVLPLDYLAAARDFTRQRDLALHLDGARLFNAAVKLG
CDAREITRHFDTVSVCLSKGLGAPVGSVLCGDDAFIAKARRLRKMVGGGMRQAGILAAAG
LYALEHNIDRLADDHRRAEWLGNELAALGFAVEPVQTNMVYVEMGAQATALTAFCAQRGI
RLTPAARLRLVTHLDVHDEHVPRVVGAFAEFAEFAENMGRN