PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2967 (386 amino acids)

SeqID: GFF2967 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16130827: phosphoglycerate kinase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2967
MAIKRMTDLNLAGKRVLIREDLNVPVKDGKVSSDARIRASLPTIKAAKDAGAKVMLMSHL
GRPEEGVYDEASSMKPVADHLTKVLGQEVRLIKDYLDGVEVADGEVVLFENVRFNKGEKK
DNEDLAKKYAALCDVYVMDAFGTAHRAQASTHGVARFAPEACAGPLLAAELEALGKALDN
PAKPVVAIVGGSKVSTKLDVLNALEKVCDSIIVGGGIANTFLAAAGHPVGKSLCEHDLID
TAKEIASRVEIPLPVDVVVASEFAETATATVKNISDVTEDDMILDVGPETAGEFAELLKN
AKTILWNGPVGVFEFDQFGNGTKALAEAIAESDAFSLAGGGDTVAAVDKYGVADKISYIS
TGGGAFLEFVEGKTLPAVAVLEERGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory