PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2991 (529 amino acids)

SeqID: GFF2991 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2991
MSWDYIIVGAGSAGCVLANRLSAAGQRVLLLEAGGKDNYHWVHIPMGYLYCINNPRTDWM
YRTEAEAGLNGRALIYPRGKVLGGCSSINGMLYLRGQAADYDGWRQRGLTGWGWDDVLPY
FKKSEDYVDGSSDMHGVGGEWRVENQRLHWDVLDDWMQAAAEWGLPKVTDFNTGNNEGVG
YFRVNQRSGWRMNTAKAFLRTATGENLKVETGAHTRRILIENGRAVGVEYSQGGAVKTAR
TGGEVLLSAGAINSPQILQLSGLGPEALLRDHGIAVQRDMPEVGQNLQDHLQLRCAWRLK
GAKTLNTLANSLIGKAKIAAEYAMRRSGPMSMAPSQLGAFSRSRPDLATPDLEYHVQPLT
LEAFGQPLHDFPGLTASVCNLRPESRGEVAITSADPMQAPRIAPNYLSTEGDRQVAVAAI
RQARAIMGQEAMQRYAPVEMKPGGGSDEAADLMQAAGAIGTTIFHPTCTLRMGAEEAAPV
DGALRLRGVGGLRVVDASVMPVIPSGNTNAPTIMIAEKAADMILSDHRG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory