PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3033 (320 amino acids)

SeqID: GFF3033 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 136751: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3033
MTRDWWKHLILILGVIVVIAPFYMMVSYSFKSPGEIDRGEGGFFGRQEMMVDERCVKLRD
PNRKDVAAAAHRFPGASDGEIRDALVAEAKADCAMRPVVFNYSKAFTEAPLLRYLLNGII
VTGSIFLIQVVVALPAAYALAKLKFWGREAVFGLVLFCLLIPVHAIALPLYIMLAKLGLT
NTYAALVVPWTISVFGIFLMRQFFMTVPDDLIDAARMDGMGEFSIVWRVMLPTAIPALLA
FAIFSIVAHWNDYFWPRIVVTGNRDLFTPPLGLREFKGDGDGSYFGPMMATATVIVTPLI
VAFLLAQKRFIEGITLSGMK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory