PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3079 (393 amino acids)

SeqID: GFF3079 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1171003: Probable phosphoribosylglycinamide formyltransferase 2]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3079
MPRIGTPLSPSATRVLLCGCGELGKELVIELQRLGVEVIAVDRYANAPAMQVAHRSHVID
MLDGAALRSVIEQERPHYIVPEIEAIATATLVELEQEGYSVIPTARAAQLTMNREGIRRL
AAEELGLPTSPYRFADSLDECRTAARALGFPCLIKPVMSSSGKGQSVLRSEADIDAAWDY
AQAGGRAGRGRVIVEGFIDFDYEITLLTVRHAGGTSFCEPVGHRQEKGDYQESWQPQPME
SVAMAEARRIALAVTDALGGRGIFGVELFVKGDQVWFCEISPRPHDTGLVTLVSQDLSEF
ALHARAILGLPIPVIRQLGPAASAVILVEGESTEVSFGNLTDVLAEPDTALRLFGKPGVS
GQRRMGVALARDVSIDAARQKALRAAAAVKVEL