PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3088 (470 amino acids)

SeqID: GFF3088 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS00123: ALKALINE_PHOSPHATASE Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.64
    Cytoplasmic            0.33
    CytoplasmicMembrane    0.02
    Extracellular          0.01
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            9.64

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3088
MNWTDFSYWGRKIADWTQDYHQTVGDRPVRARTEPGDVLNALPATPPETGEDMEAIFADF
ETVVMPGITHWQHPRFFAYFTSNAAAPSVLAEFLTSAIAPQCMLWQTSPAATEMETRMMD
WLRQALDLPEEFQGVIQDSASSATLAAVLTMREKALNWQGNEQGLFAQKTLRIYCSSEVH
TSVDRAIWVAGIGQQNLVRVPIKGDWRGMDPEALDAAIEADIAVGHQPAGVILCVGGTGV
GATDPVDQVLDVAEKYGLYTHVDAAWAGSAMICPEYRDYWPGIERADSIVFNPHKWLGVQ
FDCSAHFLKDPDDLVRTLAISPEYLKTHGKDGIINYSEWSVPLGRRFRALKIWFLIRTYG
LEGLRQRLRNHVTWSQQLHDRLKSEPDFEIVTPPMWSLWSFRYQPNGAADLDDLNLRLVN
AINDDGRIYLTQTRVDGALVIRFQAGQFETTEADVMMAHDVITEIARTLE