PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3175 (505 amino acids)

SeqID: GFF3175 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3175
MENLLAGAEMLARWDVVAALLIGSIGGVVIGAIPGVGPAVAIAILLPATFAFDPIVGLTM
LLGIYGSSMYGGAIPAVLINTPGTAVNALTSYDGHPMTQKGDAHRALSLAYSASFWGGIF
GIGCLILLSPVLALVAPMFGSREIFLAALLGVVLVILAHRGQIFAAGVLAMFGIFLQTIG
LDAVTYTQRYTFGLTFLSSGVNLIVVVLGLFALSQAFFLLTTPDNSPDAKPVSGRMSAGI
RELMRHKRVATVASGCGVILGMIPGTGEFTAQFMSYTYAQKTSKTPDLFGKGSPEGLIAS
EAANNAVPAAAMIPLLALGIPGEALTAMMLSVFYVHNVIPGPQLFQNNIDLVYGLYLALI
LLNVIVVAFLMVSTNLLTRIIRIPTRFLGVLILLLSFVGVYSLRNSLTDCMIAAGFGVLG
LILKRLNLPIVPIILGMVLGGIMEVKLRSALPRLKTPLDMIDRPISFILFALIVLVLVLH
IRALVREWQLHQPDEDHDLHDSQTR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory