PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3178 (576 amino acids)

SeqID: GFF3178 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027906: Putative sulfate transporter ychM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3178
MQLPPLFSAWRQALRLGYGTRALRGDISAGLTVGIIAIPLAMALAIAVGVAPQHGLYTVL
VAAPLIALTGGSRFNVSGPTAAFVVILLPITQQFGLGGLLLCTMLAGLILITLGLLRAGR
LIAFIPYPVTLGFTAGIGIVIATLQIKDLFGLTLTEQPQHYVEQVSLLLRSLPGAQLGDA
VVAAICLAVLIIWPRWVPKVPGHLVALTVGALAGLLLESVGLSVATLGERFSYTLDGVTH
PGIPPFLPDFAWPWLLPGPDGQPLQLSYELFRQLLAPAFAIAMLGAIESLLCAVVADGMT
GSNHEPNGELIGQGLGNLVAPLFGGITATAAIARSATNVRAGAFSPLASMIHAGVVLVAI
LWLAPLFSYLPMAALAALLVMVAWNMSEAPHVVHVLRIAPRSDVLVLLTCLILTVLFDMV
LAVGVGLLLAAGLFIKRMSELTDTTALSRDQRRLLQDMPEHVATYAIRGPLFFGAAEKAL
GALRRFNPEVKVVIVDISAVPMLDMTALAALENVLVDYRRLGVTLILSGSNARVRLKLRR
AGIHRLQGHLLYVRDLSQAREKALRLLRPEPGAATG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory