PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3218 (591 amino acids)

SeqID: GFF3218 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3218
MRTNKFGIRIAASALAMAVSYGAHAVTDEDIINDHKTPEDIVSYGMGTQGQRYSILEDLN
TSNVQYLQPAWAFSFGSEKMRGQESQPLIKDGVMYVTASYSRIYAIDARTGEEIWQYDAR
LPDGIMPCCDVVNRGAAIYGDKVIFGTLDAKLVALNKDTGKPMWIKKVADYQAGYAITAA
PMVIKGKVITGVSGGEFGIVGKVEAYDANTGDLVWTRPTVEGHMGYVYKDGKKIENGISG
GKAGVTWPGEMWKNGGAATWLGGTYDPDTDSLFFGTGNPAPWNSHLRPGDNLFSSSRLAI
DPDDGSIKWHFQTTPNDGWDYDGVNELISFDYEENGKTVKAAATADRNGFFYVLNRENGD
FIRGFPFVDKITWAEGLDPKTGRPIYAEGGRPGNPADMEGGKGEMVLAQPAFLGGKNWMP
MAFSQQTGLFYVPSNEWSMDIWNEPVSYKKGAAFLGAGFTIKPANDDYIGVLRAMDPKTG
EEVWRYENTAPLWGGVMTTAGGLVFTGTPEGHLKAFDAKTGEELYRFNTGSGVVGTPITW
TMDGEQYVSVASGWGGAVPLWGGEVAKVVKDFNQGGMVWTFKLPKDRVASN