PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3222 (617 amino acids)

SeqID: GFF3222 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3222
MNIKTRKHPLLRGIGLALALSSAAGLASQVHAKDVTWDDIANDAQTPENVLGYGIGPKAQ
RYSPMTTINRDNVERLVPAWSFSFGDEKQRGQESQALVHDGVVYVTGSYSRLFALDAKTG
ERLWEYSHRLPEGIRPCCDVVNRGAAIFGDKVFFGTLDAGIVALNKDTGKVVWREKFADH
EAGYTMTGAPTLVKDQKNRQGTADSRLLRDEFGVVGKLFARDPDTGKEIWMRPFVEGHYG
RLNGEKSTPTGDPRAPSWPDDPNTETGKVEAWSHGGGAPWQSASFDAETNTIIIGAGNPA
PWNTWKRTSPGGDPADYDNLYTSGQVGVDPTTGEVKWFYQHTPNDAWDFSGNNELVLFEY
DENGETVKATAHADRNGFFYVVDRENGEFKKGFPFVDNITWAERIGDDGRPVERKGQRPP
PVAQGETRGEAIEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVTYKKGAAY
LGQGFRIKRMYDDHVGILRAMNPLTGEIEWEHKERLPLWAGVLTTKGGLVFTGTGDGFLK
AFDAETGEELWKFQTGSGIISSPITWEMDGEQYIGVASGYGGAVPLWGGDMAELTKPISQ
GGSFWVFKMPSWAQASR