PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3227 (802 amino acids)

SeqID: GFF3227 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3227
MCVRPGRFPDSGQTATDHKARHMTLTVKEIFETMDYGPAPESAADALAWLVDQGARFGHF
INGEFTAPGDGFDSKNPATGEVLATLSQATQSDVDSAVDAARKAQTKWSAAGGAARARYL
YAIARLMQKHARLFAVLETLDNGKPIRESRDIDVPLAQRHFYYHAGMAQLMESELPDREA
LGVCGQIIPWNFPLLMLAWKVAPAIAMGNTVVLKPAEYTSLTALLFADICRQAGLPKGVV
NIVTGDGAVGEMIVGADVDKIAFTGSTAVGRRIREATAGSGKALTLELGGKSPYIVFDDA
DIDSAIEGLVDAIWFNQGQVCCAGSRLLVQEGIAERFHTKLRVRMDKLRIGNPLDKSIDV
GAIVDPVQLTTISEMVAANTAGRMHQAQVAVPERGCFYPPTLIEGLAPSDALMQEEIFGP
VLVSTTFRTPSEAVELANNTRYGLAATLWTENVNLALDIAPKLVAGVVWVNATNLFDAAA
GFGGTRESGFGREGGWEGLSAYTKPKGKTKALEKVTGFSGDGAPVDAVDRTAKFYVGGKQ
TRPDGGYSKAIHSKSGGLLGHVGLGNRKDVRNAVEAAAGANAWSKTTGHLRAQILYYIGE
NLSARVGEFADRIDRMTGKSQGAQEVEASIQRLFTAAAWADKYDGQAHGVPIRGVALAMK
EPVGVIGALCADEAPLLGLVSVMAPAIAMGNRVVLAASEAYPLSATDFYQVLETSDLPGG
VVNILTGRHAEMASPLASHLNVDAVWSFSSSDLSAMIEEASAGNLKRTWVNNGLAMDWSA
DHSRRFLEAATEVKNIWIPYGE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory