PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF33 (435 amino acids)

SeqID: GFF33 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363492: D-galactonate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF33
MHPESFTGQASLVTPTRKRFFIMVLLFITVVINYLDRSNLSIAAPALTSELGIDPVHVGL
IFSAFGWTYAAMQIPGGWLVDRVPPRILYTAALLLWSIATVMLGFAASFIALFVLRMAVG
ALEAPAYPINSRVVTTWFPERERATAIGVYTSGQFVGLAFLTPVLAWLQHAFGWHMVFVA
TGGVGIVWAVIWYAVYREPKEFKGANTAEIDLIREGGGLVDMQEKAAKAPFSWVDLGIVL
SKRKLWGIYLGQFCLNSTLWFFLTWFPTYLVKYRGMDFIKSGLLASLPFLAAFVGVLCSG
IFSDWLIRRGASVGFARKLPIIGGLLISTAIIGANYVDSTAWVIAFLAVAFFGNGLASIT
WSLVSTLAPARLLGLTGGVFNFIGNLSAIATPIVIGFLASGDSFAPAITYIAVLALLGAL
SYVLLVGKVERIELK