PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3302 (637 amino acids)

SeqID: GFF3302 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 34395944: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3302
MPVRRTRKDDGSQWTAADSRSIYGIRHWGAGYFAISDEGNVEVRPQGPSGEPIEFNGLIE
QLREAGLSLPLLVRFPGILQDRVRRLTGAFDANIERMEYAGKYTALYPIKVNQQEAVVEN
IIATQNVSIGLEAGSKPELMAVLALAPKGGTIVCNGYKDREFIRLALMGQKLGHKVFIVI
EKESEVGLVIEEANELKLTPQVGLRVRLSSLASSKWADTGGERSKFGLSAAQLLSVIERF
RAAEMDQGIRLLHFHMGSQIANLADYRQGFREAIRYYAELRALNLPVDYIDVGGGLGVDY
DGTHSRNASSINYDIDEYAGTVVGMLKEFCEAQGLPHPNIFSESGRAMTAHHAVLVMQVT
DVERHNDELPVIENYDELPEIVQSLADLLGPTDPEMVTETYWRATHYMSESSAQYASGKL
TLAQKALAEQSYFAICRRLYNQLKARQRSHRAVLDELNDKLADKYICNFSVFQSLPDTWA
IDQILPIVPLQRLSEEPVRRAVLQDLTCDSDGKIKHYVDEQSIESSMPVHEVAPGEEYFL
GVFLVGAYQEILGDMHNLFGDTDSVNVYQREDGSYYHAGIETHDTIEDMLRYVHLSPEEL
MTYYRDKVASAKLSAKERTQYIDALRLGLTRSSYLTP