PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3305 (358 amino acids)

SeqID: GFF3305 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3305
MKIRSVLSAAVLAVATTFASSQALAQDTFTLRLAETWGPNFPIFGDTTKRFAETVEKMSD
GRLKVRIDSANKHKAPLGVFDMVKAGQYDMGHSASYYWKGKVPETLFFTSMPFGMIAMEQ
YAWFYHGGGMELMQEVYEPHNMLSFPGGNTGVQMGGWFRKEINSIDDLKGLKMRIPGFAG
EVFAEVGVNPTNIAPGELYTALERNTIDAVEWVGPALDLRLGFQQIADYYYTGWHEPATE
LQFLVNKRVWDKLPADLQEIMRVAMRTASYDMLVQSQHANAEAWANIKEEYPNVQIKQFP
DDVFDAMYAANEKLLDEAAEGSEMAAKIIESQQNYLEKSRAYTDISERAYLNTMAEVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory