PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3354 (500 amino acids)

SeqID: GFF3354 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3354
MYDANPLIRHLRAASLDREGALFATRPGADPVGYGELFAGAERMAAALVSRGVAPGDRVA
AQVDKSLAAIQLYLGTVMAGAIFLPLNPAYTEAEVAYFIGDATPRVFVCNPVRHESLRAV
AGEATVLTLDGEGQGSLADLAAGHAGFEPIERKPSDLAAILYTSGTTGRSKGAMLSHENL
YSNSLTLRDYWQFTAEDVLIHALPIFHTHGLFVATNVALLAGAQVVLLPGFDAEAILAAM
PNATALMGVPTFYTRLLVDARLTPDLAANMRLFISGSAPLLVETHEQWEARTGHRILERY
GMTETNMSTSNPYDGVRVAGTVGPPLPGVEARVTLDNAEIPLGEIGVLEVRGPNVFQGYW
QMPEKTAEELRPDGWFITGDLAKIDSNGYVTIVGREKDLVISGGFNVYPKEVETLIDDLP
GVLESAVIGVPHPDFGEAVVAVVVPTEEGTDAASIQAALSEHLAKFKQPKHIALMDELPR
NTMGKVQKKALRETFAQLFT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory