PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3355 (344 amino acids)

SeqID: GFF3355 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141693: Glycine betaine/L-proline transport system permease protein proW]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3355
MATYDSLFSSLGLEQWCSEGKSSGPMSMADLLNKTKGESAEPASIWELPFPSMDALNESC
SAFPQSRELTKGLEQGFLAIKDSLSLVLDPLTQPLSWFLDGALYAMLNTPWWIVIPLLLA
VVYVVTKSWKLMLFVGGSIVLLAFIDHYDYAMQTLAIIFVCAFLCVLLGVPIGIAMARSN
SLQRMIIPVLDMLQTLPPFVYLIPLIFLFSVTESKLYGIAIILYAIVPVIRLTNLGIRLV
DKDVIEAADAFGMTPRQKLYKVQIPLALPNIMAGVNQTIMMSLAMVVIASLVSAPGLGVL
VLRGIRNLELGVGLVSGLGIVILAVILDRVTKASLARINVSQKQ