PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3376 (880 amino acids)

SeqID: GFF3376 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3376
MKLGKKKDADASVDEKPAKKAVKKEKTSSSGPKLKRLNSVAVNQSLVVVLAGVIAVALLH
FLVVQPSAKERFESLKVLEADAAALRLNQYFDQVQKSVNGLATQPHVVQALNSRNEIPTT
EVQLADSLPGIEAVHLFPYRDIPRTSSSEGLLGFSGLELARRAETGQRLFPDAFPRDNRW
FVQMATPVRNPTSNAVIGSLLIIFDSGQIQPLLQVVNSSLGGQLALVQTVSGSPRTVVSN
GSGSGNAESRRLSNPDWTVAYTPAKSSAAPVDTVMIALLVGVPALIAAIIVWVLLGGAQK
GLRQDVTALIQWAHKVFGGERVKLPTFRWDMVASTGEVLYRLSQVVDKRVAKAGETAKPR
PAGSGKAGGGAAKGGDEPLFQDKDMPDIDMLDGDEDVLGFGSGDDTVFGSGDTPDVEEVT
LPQVELPQDIFRAYDIRGIVGETLTAEGVEVIGRAIGSEARERGVDSLCIGYDGRHSSPD
LADALARGVMAAGCNVIHVGAVPTPVLYFATHELQTGSGVMVTGSHNPANYNGLKIMLGG
ETLSGEAIQKLYQRIQTGDFASGRGSQSTEDVRRAYLDRIVGDIAVAAPLKVVVDAGNGI
AGELAPMLIEELGCEVIPLYCEVDGDFPNHHPDPGKPANLADLIARVESEGADIGLAFDG
DGDRLGVVTNSGKIIWPDRLMMLFARDVVSRNPGADVLYDVKCSRRLAGVISEAGGRPIM
WKTGHSLMKAKMKETGALLAGEMSGHIFFGERWYGFDDGLYSAARLLEILGIEDRHSDEV
FEDFPDDISTPELNVQVTESSKFDIIKRLGESGDFGDGNISTIDGIRVDYADGWGLCRAS
NTTPVLVLRFEAETDEALERIKSVFRDQLQKAAPDLVADF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory